I am not sure what might be happening there,
since this works for me. What version of AFNI
are you running (afni -ver)?
And where is this script located
(which @SUMA_AlignToExperiment)?
Would you please run it via 'tcsh -x' and send
me the text output via email? So consider:
# (assuming $subj and $surface_dir are set)
mkdir rickr.test
cp anat_final.$subj+orig* rickr.test
cd rickr.test
tcsh -x `which @SUMA_AlignToExperiment` \
-exp_anat anat_final.$subj+orig \
-surf_anat $surface_dir/101_SurfVol+orig \
-wd -strip_skull surf_anat \
-atlas_followers -overwrite_resp S \
-prefix ${subj}_SurfVol_Alnd_Exp \
|& tee out.a2e.txt
And then send me the out.a2e.txt file via email.
Thanks,
- rick
