AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 15, 2017 09:44AM
Hi Tracy,

How long are the events? It looks to me like they might
be 6 seconds long, since the timing file seems to show
triplets of events, spaced on the TR grid. Are they
consecutive short events that you want to model, or are
they really single longer (6 s) events? If the latter,
Consider modeling each as a single event, and then using
longer response functions.

Along those lines, what is the reasoning for using basis
function TENT(0,6,4)? That allows for 6 second response
functions. For humans, we generally do not expect them
to be shorter than 12 s, though the endpoints can be
removed if they are assumed to be zero.

What does rest_time.1D represent? Is it actually the
time points that are not part of left_hand_time.1D and
right_hand_time.1D? If so, it should not be included.
Rest time is implicit in 3dDeconvolve. If rest time is
included as events, that will probably lead to the errors
and warnings you are seeing.

- rick
Subject Author Posted

Fatal errors from 3dDeconvolve

TracyW November 10, 2017 06:21AM

Re: Fatal errors from 3dDeconvolve

TracyW November 13, 2017 07:44PM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 15, 2017 09:44AM

Re: Fatal errors from 3dDeconvolve

TracyW November 15, 2017 07:37PM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 17, 2017 08:35AM

Re: Fatal errors from 3dDeconvolve

TracyW November 18, 2017 01:14AM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 20, 2017 09:23AM

Re: Fatal errors from 3dDeconvolve

TracyW November 20, 2017 10:28PM