AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 20, 2017 09:23AM
Hi Tracy,

Well, I might say that assuming one chooses to uses TENTs,
then an event-related design (slow, preferably) is more
suitable than a block design. But having an event-related
design does not mean that TENTs are preferable. This task
might be well suited for using BLOCK(6,1), unless handling
variable response shapes is desired (you have suggested it
is).

In any case, since the events last 6 seconds, there should
only be an event at time 0 s, for example, not also at times
2 and 4 s. The TENT functions will account for the different
time points.

Also, the TENTs should be modeling the full response period,
not just the stimulus period. The purpose of the TENTs is
to model the average response, which might last about 18 s
in this case. So consider TENT(0,18,10), say, or something
else along those lines.


Yes, the underlay can be anything in the final space. If
you want to ponder the fitts, maybe make all_runs the
underlay and use the Dataset #N plugin to plot the fitts
along with it.

That overlay plotting seems good to me, though it is not
usually important to perform such a cluster correction at
the single subject level, not if the plan is to do it at
the group level later. But still, it is fine.

- rick
Subject Author Posted

Fatal errors from 3dDeconvolve

TracyW November 10, 2017 06:21AM

Re: Fatal errors from 3dDeconvolve

TracyW November 13, 2017 07:44PM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 15, 2017 09:44AM

Re: Fatal errors from 3dDeconvolve

TracyW November 15, 2017 07:37PM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 17, 2017 08:35AM

Re: Fatal errors from 3dDeconvolve

TracyW November 18, 2017 01:14AM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 20, 2017 09:23AM

Re: Fatal errors from 3dDeconvolve

TracyW November 20, 2017 10:28PM