AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
November 18, 2017 01:14AM
Hi Rick,

Yes, I expected that the BOLD responses vary across the brain. Therefore I used TENT function. And I also think that TENT is more suitable for event-related stimulus right? And my stimulus is event-related not blocked.

For GLT, I have tried without including rest_time.1D following your suggestion. And to make sure I myself do the right analysis, may I write down the steps I did as follows?:
So for the underlay, I chose the "fitts" results (Actually no matter what is ok right?)
And for the overlay, I chose results from "bucket", named "stats" to see the GLT results.

For the functional color overlay controls:
OLay - chose lefthand#0_Coef
Thr - chose lefthand#0_Tstat

Then to see the clustim results, I chose cluster size of pthr=0.01 and alpha=0.05, which is 80 voxels from NN1_2sided.1D file.
Then click Report to see the activated regions. And the listed clusters are the real responsive ones, right?

I'm sorry that perhaps my questions are quite boring and stupid. But I just found I can not ask for help except in AFNI's forum...
Really appreciate for your reply Rick.


Best regards,
Tracy
Subject Author Posted

Fatal errors from 3dDeconvolve

TracyW November 10, 2017 06:21AM

Re: Fatal errors from 3dDeconvolve

TracyW November 13, 2017 07:44PM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 15, 2017 09:44AM

Re: Fatal errors from 3dDeconvolve

TracyW November 15, 2017 07:37PM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 17, 2017 08:35AM

Re: Fatal errors from 3dDeconvolve

TracyW November 18, 2017 01:14AM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 20, 2017 09:23AM

Re: Fatal errors from 3dDeconvolve

TracyW November 20, 2017 10:28PM