AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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November 17, 2017 08:35AM
Hi Tracy,

The main point about longer response function is that
the basis function provided to 3dDeconvolve is indeed
intended to be a response function, notably _not_ just
a stimulus function. If the stimuli last 6 s, one would
expect the response to last at least 18 s, maybe longer.
So TENT(0,18,10) would make more sense.

To be sure, are you expecting the response shapes to
differ across the brain, or at least not to look like
the BLOCK() or SPMG() shapes? What is your reasoning
for using TENT over fixed shape regression?

Right, rest_time.1D should not be included. The default
betas output by 3dDeconvolve are automatically contrasts
against the implicit baseline. If you ask for lefthand
as a GLT, it would simply be the same as that main beta.

- rick
Subject Author Posted

Fatal errors from 3dDeconvolve

TracyW November 10, 2017 06:21AM

Re: Fatal errors from 3dDeconvolve

TracyW November 13, 2017 07:44PM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 15, 2017 09:44AM

Re: Fatal errors from 3dDeconvolve

TracyW November 15, 2017 07:37PM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 17, 2017 08:35AM

Re: Fatal errors from 3dDeconvolve

TracyW November 18, 2017 01:14AM

Re: Fatal errors from 3dDeconvolve

rick reynolds November 20, 2017 09:23AM

Re: Fatal errors from 3dDeconvolve

TracyW November 20, 2017 10:28PM