AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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February 19, 2020 04:31PM
Hi,


I´ve been trying to run a smooth on a subject surface with this command in a script:

SurfSmooth -spec $SUMA_path/mesh140.${subj}_"$h".spec \
-surf_A mesh140."$h".smoothwm.asc \
-met HEAT_07 -input $data_path/"$h"_${subj}_decon_$condition.TENT.ave_.niml.dset \
-target_fwhm 6 -Niter -1 \
-output $data_path/"$h"_${subj}_decon_$conds.TENT.ave_.blur6.niml.dset


but get this error message and I do not know why the SyrfSmooth can get a mean fwhm:


-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm
-- Error SurfSmooth (SUMA_SurfSmooth.c:2128):
Failed to get mean fwhm

I would appreciate so much to receive some guidance because couldn't find a response to an error of this type.
Subject Author Posted

Surfsmooth error

franciscoara February 19, 2020 04:31PM

Re: Surfsmooth error

ptaylor February 19, 2020 05:01PM

Re: Surfsmooth error

franciscoara February 20, 2020 12:11PM

Re: Surfsmooth error

ptaylor February 20, 2020 01:20PM

Re: Surfsmooth error

franciscoara February 20, 2020 06:54PM

Re: Surfsmooth error

ptaylor February 21, 2020 06:09AM

Re: Surfsmooth error

franciscoara February 24, 2020 02:02PM

Re: Surfsmooth error

ptaylor February 24, 2020 03:47PM

Re: Surfsmooth error Attachments

franciscoara February 27, 2020 06:00PM

Re: Surfsmooth error

franciscoara March 04, 2020 03:06PM