Hi Everyone,
I am new using afni and the all the suit. To the point, I have several NHP MRIs but in particular I am interesting to do reconstruction of recording sites by electrophysiology. I applied the @animal_warper to the example_subject no problem everything was ok, when I applied to my MRIs was totally distorted (I tested with 2 MRI). Check with detail I figured out that the order (sagittal, coronal, axial ) are uncorrected in my mri, I corrected using 3drefit -orient, I run again but still distorted then I figured out the distortion start at this level
Matrix, aff xform : T1_shft_al2std_mat.aff12.1D
Input, aff-xformed to base (orig res) : T1_shft_al2std.nii.gz
I attach the figure afni display
Any help I will appreciate.
Fabian
