Hi Taylor,
Thanks for the all the advice. I started to see the anfi bootcamp.
I run the command and the script again and looks more better, I see the coronal is not complete overlay. Is there a procedure to improve it?
Other question, you mention that it would be better if I crop the mri to extract the brain. Is there a method to do with afni or is possible to do with matlab and write as nifti and after centered using command you gave me?
In relation to your last question, I am involved in two projects, one about is electrophysiology where I need in the one hand planning a chamber and second locate the recordings sites for previous recordings, this is the current analysis. The second, we are planning in the couple of weeks to do fmri and stimulate with focused ultrasound. All the tools in afni will be very useful.
I will run again the @animal_warper using T1w_recent.nii.gz.
Thanks again
Fabian