History of AFNI updates  

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jef
October 13, 2020 10:13AM
Thank you!

I fixed the qvars to only indicate one centered variable and updated my model name to indicate table-level variable names only. I also deleted variables from the table that weren't called in this simpler model in case that was also causing an issue?

I have a couple follow up questions. In the past using 3dLME, I had conditions specified under the table name (e.g., "Ant" as the table name and "rew" and "pun" as sub-conditions). Is that not the case or have I not properly specified "rew" and "pun" were being called from the "Ant" column? I added in a few of the subjects to reference where the "rew" and "pun" are coming from. I'm getting the same error, about table size so I know I'm still not indicating it correctly, but confused how else to specify those subconditions.

Thanks again!


3dLME -prefix 3dLME_v1 \
-model "Ant*grade_c" \
-resid grade_resids \
-ranEff '~1+grade_c' \
-SS_type 3 \
-qVars "grade_c" \
-qVarsCenters "0" \
-mask \
-num_glf 1 \
-glfLabel 1 'Ant_grade' -glfCode 1 'Ant : 1*rew & 1*pun grade_c :' \
-dataTable \
Subj	Ant	grade_c	Inputfile \
001	rew	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1001/con_001.nii \
001	pun	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1001/con_002.nii \
001	neu	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1001/con_003.nii \
003	rew	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1003/con_001.nii \
003	pun	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1003/con_002.nii \
003	neu	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1003/con_003.nii \
003	rew	3	/Volume/DSNLab/NeuroTeen/subs/wave3/NT3003/con_001.nii \
003	pun	3	/Volume/DSNLab/NeuroTeen/subs/wave3/NT3003/con_002.nii \
003	neu	3	/Volume/DSNLab/NeuroTeen/subs/wave3/NT3003/con_003.nii \
Subject Author Posted

error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 09, 2020 08:26AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

ptaylor October 09, 2020 09:16AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 10:40AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

ptaylor October 12, 2020 01:21PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 06:55PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 12, 2020 07:16PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 08:40PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 12, 2020 11:06PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 13, 2020 10:13AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 13, 2020 10:42AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 13, 2020 11:13AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 14, 2020 09:06AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 14, 2020 11:53AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 15, 2020 10:55AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

rick reynolds October 19, 2020 11:11AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 21, 2020 11:25AM