AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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jef
October 13, 2020 10:13AM
Thank you!

I fixed the qvars to only indicate one centered variable and updated my model name to indicate table-level variable names only. I also deleted variables from the table that weren't called in this simpler model in case that was also causing an issue?

I have a couple follow up questions. In the past using 3dLME, I had conditions specified under the table name (e.g., "Ant" as the table name and "rew" and "pun" as sub-conditions). Is that not the case or have I not properly specified "rew" and "pun" were being called from the "Ant" column? I added in a few of the subjects to reference where the "rew" and "pun" are coming from. I'm getting the same error, about table size so I know I'm still not indicating it correctly, but confused how else to specify those subconditions.

Thanks again!


3dLME -prefix 3dLME_v1 \
-model "Ant*grade_c" \
-resid grade_resids \
-ranEff '~1+grade_c' \
-SS_type 3 \
-qVars "grade_c" \
-qVarsCenters "0" \
-mask \
-num_glf 1 \
-glfLabel 1 'Ant_grade' -glfCode 1 'Ant : 1*rew & 1*pun grade_c :' \
-dataTable \
Subj	Ant	grade_c	Inputfile \
001	rew	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1001/con_001.nii \
001	pun	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1001/con_002.nii \
001	neu	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1001/con_003.nii \
003	rew	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1003/con_001.nii \
003	pun	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1003/con_002.nii \
003	neu	1	/Volume/DSNLab/NeuroTeen/subs/wave1/NT1003/con_003.nii \
003	rew	3	/Volume/DSNLab/NeuroTeen/subs/wave3/NT3003/con_001.nii \
003	pun	3	/Volume/DSNLab/NeuroTeen/subs/wave3/NT3003/con_002.nii \
003	neu	3	/Volume/DSNLab/NeuroTeen/subs/wave3/NT3003/con_003.nii \
Subject Author Posted

error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 09, 2020 08:26AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

ptaylor October 09, 2020 09:16AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 10:40AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

ptaylor October 12, 2020 01:21PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 06:55PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 12, 2020 07:16PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 12, 2020 08:40PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 12, 2020 11:06PM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 13, 2020 10:13AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 13, 2020 10:42AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 13, 2020 11:13AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 14, 2020 09:06AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

gang October 14, 2020 11:53AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 15, 2020 10:55AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

rick reynolds October 19, 2020 11:11AM

Re: error with R_io.so when checking afni_system_check.py -check_all to run run 3dLME

jef October 21, 2020 11:25AM