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April 13, 2022 10:35AM
Perhaps that's part of the issue. The group dataset I'm trying to visualize seems misaligned to the HaskinsPeds T1.nii and *.spec file. Maybe the group data needs to be regrided?

I'm visualizing using AFNI+SUMA:
afni -niml &
suma -spec ../../ref/HaskinsPeds/freesurfer/HaskinPeds/SUMA/std.141.HaskinPeds_both.spec -sv ../../ref/HaskinsPeds/freesurfer/HaskinPeds/SUMA/T1_new.nii &

*Press "t" to get AFNI & SUMA to talk...

NOTE: T1_new.nii is the output from
3drefit -space HaskinsPeds ../../ref/HaskinsPeds/freesurfer/HaskinPeds/SUMA/T1.nii

I've attached a few screenshots to visualize the misalignment.


Subject Author Posted

HaskinsPed .spec file for SUMA

aclynn11 April 11, 2022 04:29PM

Re: HaskinsPed .spec file for SUMA

Daniel Glen April 11, 2022 05:01PM

Re: HaskinsPed .spec file for SUMA

aclynn11 April 12, 2022 02:30PM

Re: HaskinsPed .spec file for SUMA

Daniel Glen April 12, 2022 07:35PM

Re: HaskinsPed .spec file for SUMA Attachments

aclynn11 April 13, 2022 10:35AM

Re: HaskinsPed .spec file for SUMA

Daniel Glen April 13, 2022 01:52PM

Re: HaskinsPed .spec file for SUMA

aclynn11 April 13, 2022 02:16PM

Re: HaskinsPed .spec file for SUMA

aclynn11 April 13, 2022 02:26PM

Re: HaskinsPed .spec file for SUMA

Daniel Glen April 15, 2022 09:50PM

Re: HaskinsPed .spec file for SUMA Attachments

aclynn11 April 19, 2022 03:31PM



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