AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 22, 2009 04:23PM
I have a question regarding the capabilities of the 3dDeconvolve program. I have a functional dataset from which I wish to retrieve an averaged 1-D Hemodynamic response function.

I have the timing file of the stimulus (given in block stimulus times : ), as well as the functional dataset itself, which has been properly preprocessed (deoblique, masked, clip, despiked, etc), and I wish to retrieve the 1-D HRF graph from each voxel, and then average together the HRF for all activated voxels above a certain threshold.

My questions basically are:
1.) Can 3dDeconvolve create 1-D graphs of HRFs, and if so, how? What sort of inputs and specifications should I put in? How do I retrieve/view the output once the calculations have finished?
2.) Once I have such graphs, how should I go about retrieving the graphs from only activated voxels? Using 3dDeconvolve, I have been able to retrieve a activation map showing the activated voxels, but how should I single out the data from said voxels for use in calculation?

Thanks in advance for all your help! Please let me know if you need any information/screenshots.
Subject Author Posted

3dDeconvolve?

Alice June 22, 2009 04:23PM

Re: 3dDeconvolve?

Gang Chen June 23, 2009 03:43PM

Re: 3dDeconvolve?

Alice June 24, 2009 02:16PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 09:58AM

Re: 3dDeconvolve?

Alice June 25, 2009 02:26PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 02:53PM

Re: 3dDeconvolve?

Alice June 25, 2009 05:34PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 06:18PM

Re: 3dDeconvolve?

Alice June 26, 2009 03:43PM

Re: 3dDeconvolve?

Gang Chen June 26, 2009 04:11PM

Re: 3dDeconvolve?

Alice June 26, 2009 05:42PM

Re: 3dDeconvolve?

Gang Chen June 26, 2009 06:09PM

Re: 3dDeconvolve?

Alice June 26, 2009 05:45PM