AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

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June 25, 2009 06:18PM
> What should my b, c, n values be?

See details here (~4/5 down on the page):

[afni.nimh.nih.gov]

Basically these parameters will decide the beginning (b) and end (c) of the HRF, and number (n) of basis functions. Usually you set b=0 unless you believe there is anticipation or delay going on. Setting c and n will depend on your specific experiment type.

> Would this command run correctly with the given files (attached).

Looks fine to me. You don't have to, but you may scale your original EPI signal be the voxel-wise mean so that the resultant betas can be interpreted as percent signal change.

> Would the output be the correct 1D graph of a HRF?

I think so.

HTH,
Gang
Subject Author Posted

3dDeconvolve?

Alice June 22, 2009 04:23PM

Re: 3dDeconvolve?

Gang Chen June 23, 2009 03:43PM

Re: 3dDeconvolve?

Alice June 24, 2009 02:16PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 09:58AM

Re: 3dDeconvolve?

Alice June 25, 2009 02:26PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 02:53PM

Re: 3dDeconvolve?

Alice June 25, 2009 05:34PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 06:18PM

Re: 3dDeconvolve?

Alice June 26, 2009 03:43PM

Re: 3dDeconvolve?

Gang Chen June 26, 2009 04:11PM

Re: 3dDeconvolve?

Alice June 26, 2009 05:42PM

Re: 3dDeconvolve?

Gang Chen June 26, 2009 06:09PM

Re: 3dDeconvolve?

Alice June 26, 2009 05:45PM