AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
June 26, 2009 06:09PM
Alice,

I assume you have an event-related design. In other words, each stimulus shown on the screen to the subject lasts for one TR or less. So you presume your HRF would last for 20 seconds? Maybe 15 (or even 10) seconds would be good enough? Let's go with 15 s, and set b=0 and c=15. You don't have to, but choosing n = 7 would span each TENT nicely over 4 TR's so that the beta corresponding each TENT would be exactly the BOLD response at every other TR grid.

> The main thing that confuses me about the results I got from the
> deconvolution after using 8 tent functions were the graphs. What am I
> supposed to do with the 8 graphs? According to slides 5 and 6 on the pdf-- am
> I supposed to add these 8 graphs together to get a final HRF response?

The modeled HRF through deconvolution is the linear combination of those n tents, and those beta's are supposed to be coefficients for the linear combination. More specifically, those beta's are actually the BOLD response at some grids. So if you specify the number of tents carefully, those beta's would be exactly the BOLD response at some TR grids.

In other words, if you plot out those sequential beta's as a time series, it would be your modeled HRF for each stimulus type, lasting for whatever time length you set in TENT(b,c,n), which is c-b. This has nothing to do with your total time points in the data.

HTH,
Gang
Subject Author Posted

3dDeconvolve?

Alice June 22, 2009 04:23PM

Re: 3dDeconvolve?

Gang Chen June 23, 2009 03:43PM

Re: 3dDeconvolve?

Alice June 24, 2009 02:16PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 09:58AM

Re: 3dDeconvolve?

Alice June 25, 2009 02:26PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 02:53PM

Re: 3dDeconvolve?

Alice June 25, 2009 05:34PM

Re: 3dDeconvolve?

Gang Chen June 25, 2009 06:18PM

Re: 3dDeconvolve?

Alice June 26, 2009 03:43PM

Re: 3dDeconvolve?

Gang Chen June 26, 2009 04:11PM

Re: 3dDeconvolve?

Alice June 26, 2009 05:42PM

Re: 3dDeconvolve?

Gang Chen June 26, 2009 06:09PM

Re: 3dDeconvolve?

Alice June 26, 2009 05:45PM