-afni : Current list of packages for afni.
Similar to rPkgsInstall.
afex phia snow nlme lme4 paran brms
-shiny : Current list of packages for afni based shiny apps.
May have trouble with openssl on some linux OS's.
Make sure the openssl OS package is installed with a
package manager (apt-get, yum, etc.).
shiny shinydashboard plotly colourpicker data.table
gplots RColorBrewer psych
-bayes_view : Packages the program bayes_view.
Lots of shiny and ggplots packages.
Only needed if you want to run bayes_view.
-circos : Packages for FATCAT_matplot.
Installs OmicCircos via biocLite.
Actually runs OmicCircos_pkg_install.R.
-custom : Install whatever R packages you desire.
Requires a space separated list of packages.
Must start and end with double quotes.
e.g. "earth wind fire"
-mirror : Set the cran mirror to something besides the default of
-help : Show this help.