Hi Alex,
So that's a different perspective, it is Dimon that is not getting
what it expects. As of now, Dimon does not work with montage data.
You must have data from a Siemen's scanner, is that right?
I had thought your difficulty was properly getting data _out_ of
afni and into an external program...
Dimon is meant to monitor incoming slices, verify that they make up
each volume properly, and then send the volume to afni. Is was not
written to handle montage data (though that is something I will have
to add at some point, it seems).
To verify, your goal is to use Dimon for real-time scanning on a
Siemen's scanner, sending the data to afni and then on to Matlab
(or serial_helper, python, etc.) for providing real-time feedback.
Is that correct?
- rick