AFNI Message Board

Dear AFNI users-

We are very pleased to announce that the new AFNI Message Board framework is up! Please join us at:

https://discuss.afni.nimh.nih.gov

Existing user accounts have been migrated, so returning users can login by requesting a password reset. New users can create accounts, as well, through a standard account creation process. Please note that these setup emails might initially go to spam folders (esp. for NIH users!), so please check those locations in the beginning.

The current Message Board discussion threads have been migrated to the new framework. The current Message Board will remain visible, but read-only, for a little while.

Sincerely, AFNI HQ

History of AFNI updates  

|
May 04, 2009 02:34PM
Hey everybody,

We recently updated the computers in our lab and installed a 64bit version of Fedora 10. We have also installed AFNI/SUMA and Freesurfer. AFNI works fine, but I am getting errors when I try to run SUMA. Also, the SUMA screen shows the outline of the brain surface, but within that outline it is completely white.

Initially I thought it was related to a missing package, but ldd does not turn up any missing packages. Google has not been much help, either. Pasted below are the errors I get when I try to run SUMA, as well as the output of ldd. Thanks in advance for your help.

Nick

[balders2@brodmann 01B]# suma -spec 01B_lh.spec -sv 01B.anat+tlrc
Warning: Cannot convert string "9x15" to type FontStruct
Warning:
Name: File
Class: XmCascadeButton
Illegal mnemonic character; Could not convert X KEYSYM to a keycode

Warning:
Name: View
Class: XmCascadeButton
Illegal mnemonic character; Could not convert X KEYSYM to a keycode

Warning:
Name: Tools
Class: XmCascadeButton
Illegal mnemonic character; Could not convert X KEYSYM to a keycode

Warning:
Name: Help
Class: XmCascadeButton
Illegal mnemonic character; Could not convert X KEYSYM to a keycode

Warning:
Name: File
Class: XmCascadeButton
Illegal mnemonic character; Could not convert X KEYSYM to a keycode

Warning:
Name: View
Class: XmCascadeButton
Illegal mnemonic character; Could not convert X KEYSYM to a keycode

Warning:
Name: Tools
Class: XmCascadeButton
Illegal mnemonic character; Could not convert X KEYSYM to a keycode

Warning:
Name: Help
Class: XmCascadeButton
Illegal mnemonic character; Could not convert X KEYSYM to a keycode


vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #1/4(Local Domain Parent), loading ...

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #2/4 (mappable via Local Domain Parent), loading ...

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #3/4 (mappable via Local Domain Parent), loading ...

vvvvvvvvvvvvvvvvvvvvvvvvvvvvSurface #4/4 (mappable via Local Domain Parent), loading ...
[root@brodmann bin]# ldd suma
linux-vdso.so.1 => (0x00007fff151ff000)
libGLw.so.1 => /usr/lib64/libGLw.so.1 (0x00007ff50ceca000)
libGLU.so.1 => /usr/lib64/libGLU.so.1 (0x0000003ec1600000)
libGL.so.1 => /usr/lib64/libGL.so.1 (0x0000003ed3c00000)
libXt.so.6 => /usr/lib64/libXt.so.6 (0x0000003ecac00000)
libXft.so.2 => /usr/lib64/libXft.so.2 (0x0000003ed4800000)
libXp.so.6 => /usr/lib64/libXp.so.6 (0x00007ff50ccbf000)
libXpm.so.4 => /usr/lib64/libXpm.so.4 (0x0000003ecb400000)
libXext.so.6 => /usr/lib64/libXext.so.6 (0x0000003ec4e00000)
libXmu.so.6 => /usr/lib64/libXmu.so.6 (0x0000003ecb000000)
libSM.so.6 => /usr/lib64/libSM.so.6 (0x0000003ecd400000)
libICE.so.6 => /usr/lib64/libICE.so.6 (0x0000003ecec00000)
libX11.so.6 => /usr/lib64/libX11.so.6 (0x0000003ec3a00000)
libpng12.so.0 => /usr/lib64/libpng12.so.0 (0x0000003ec5200000)
libjpeg.so.62 => /usr/lib64/libjpeg.so.62 (0x00007ff50ca9a000)
libz.so.1 => /lib64/libz.so.1 (0x0000003ec2200000)
libm.so.6 => /lib64/libm.so.6 (0x0000003ec0e00000)
libdl.so.2 => /lib64/libdl.so.2 (0x0000003ec0a00000)
libc.so.6 => /lib64/libc.so.6 (0x0000003ec0600000)
libfontconfig.so.1 => /usr/lib64/libfontconfig.so.1 (0x0000003ec5a00000)
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x0000003ed1800000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x0000003ecfc00000)
libXxf86vm.so.1 => /usr/lib64/libXxf86vm.so.1 (0x0000003ed6c00000)
libXdamage.so.1 => /usr/lib64/libXdamage.so.1 (0x0000003ec9800000)
libXfixes.so.3 => /usr/lib64/libXfixes.so.3 (0x0000003ec6200000)
libdrm.so.2 => /usr/lib64/libdrm.so.2 (0x0000003ed0800000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x0000003ec1200000)
libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x0000003ec5600000)
libXrender.so.1 => /usr/lib64/libXrender.so.1 (0x0000003ec7a00000)
libXau.so.6 => /usr/lib64/libXau.so.6 (0x0000003ec4600000)
libuuid.so.1 => /lib64/libuuid.so.1 (0x0000003ecc000000)
libxcb-xlib.so.0 => /usr/lib64/libxcb-xlib.so.0 (0x0000003ec3200000)
libxcb.so.1 => /usr/lib64/libxcb.so.1 (0x0000003ec3e00000)
/lib64/ld-linux-x86-64.so.2 (0x0000003ec0200000)
libexpat.so.1 => /lib64/libexpat.so.1 (0x0000003ec4a00000)
libXdmcp.so.6 => /usr/lib64/libXdmcp.so.6 (0x0000003ec3600000)
Subject Author Posted

Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 04, 2009 02:34PM

Re: Cannot convert string "9x15" to type FontStruct

Bob Cox May 04, 2009 03:11PM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 04, 2009 04:26PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 04, 2009 04:12PM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 04, 2009 05:01PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 04, 2009 05:11PM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 04, 2009 05:34PM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 04, 2009 06:00PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 04, 2009 06:29PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 05, 2009 10:57AM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 05, 2009 12:23PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 05, 2009 03:19PM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 05, 2009 01:42PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 05, 2009 02:14PM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 05, 2009 02:29PM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 05, 2009 04:21PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 08, 2009 10:23AM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 09, 2009 04:24PM

Re: Cannot convert string "9x15" to type FontStruct

Nicholas Balderston May 11, 2009 05:27PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 11, 2009 06:26PM

Re: Cannot convert string "9x15" to type FontStruct

rick reynolds May 26, 2009 10:01AM