Usage: @SUMA_FSvolToBRIK <FSvoldata> <Prefix>
A script to convert COR- or .mgz files from FreeSurfer.
DO NOT use this script for general purpose .mgz conversions
Use mri_convert instead.
Example 1: Taking COR- images in mri/orig to BRIK volume
@SUMA_FSvolToBRIK mri/orig test/cor_afni
Example 2: Taking .mgz volume to BRIK volume
@SUMA_FSvolToBRIK mri/aseg.mgz test/aseg_afni
To view segmented volumes in AFNI, use the FreeSurfer
color scale by doing:
Define Overlay --> Pos? (on)
Choose continuous (**) colorscale
Right Click on colorscale --> Choose Colorscale
Select FreeSurfer_Seg_255
Set Range to 255
