@djunct_overlap_check

OVERVIEW

More helpful helpfile description coming (some day...)

This is just a helper script for other things.

written by PA Taylor, modelled heavily on RW Cox's '@snapshot_volreg'
script

# --------------------------------------------------------------------

COMMAND OPTIONS

-hview
-help
-ver
-echo
-ulay              ULAY
-olay              OLAY
-prefix            PREFIX
-box_focus_slices  DSET_BFS
-montgap           MG
-montcolor         MC
-cbar              CBAR
-opacity           OPA
-zerocolor         ZC
-set_dicom_xyz     XX YY ZZ
-ulay_range        umin umax
-ulay_range_nz     umin umax
-montx             MX
-monty             MY
-montx_cat         MX2
-monty_cat         MY2
-label_mode        LM
-pbar_posonly_off
-edgy_ulay
-set_dicom_xyz_off
-no_cor
-no_axi
-no_sag
-no_clean

NOTES TO SELF

This is mostly useful if the olay has no skull and the ulay has a
skull, in terms of being able to see overlap well.

If using -box_focus_slices, don't use the AMASK_FOCUS_OLAY keyword,
but instead repeat the name of the olay explicitly.  This is because
this program creates an edgified version of the olay, which gets
passed into @chauffeur_afni, and then using the AMASK* functionality
would try to 'automask' that dset, typically leaves no voxels and
leads to an error.  Repeating the name of the input olay leads to
correct behavior.  (Ask me how I discovered *this* tidbit of
knowledge?)