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AFNI program -help files

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AFNI program -help files

Results of running each program with the -help option
*All -help Files on One VERY Long Page*

*Common options for most AFNI programs*

*Detailed History of AFNI software changes*

Links in the Table Below are to Individual -help Files
1dFlagMotion 1dMarry 1dSEM 1dTsort
1dUpsample 1dcat 1ddot 1deval
1dfft 1dgrayplot 1dmatcalc 1dnorm
1dplot 1dsum 1dsvd 1dtranspose
24swap 2dImReg 2swap 3dAFNIto3D
3dAFNItoANALYZE 3dAFNItoMINC 3dAFNItoNIFTI 3dAFNItoNIML
3dAFNItoRaw 3dANALYZEtoAFNI 3dANOVA 3dANOVA2
3dANOVA3 3dAcost 3dAllineate 3dAnatNudge
3dAnhist 3dAttribute 3dAutoTcorrelate 3dAutobox
3dAutomask 3dBRAIN_VOYAGERtoAFNI 3dBlurToFWHM 3dBrickStat
3dCM 3dCRUISEtoAFNI 3dClipLevel 3dConvolve
3dDFT 3dDTeig 3dDWItoDT 3dDeconvolve
3dDeconvolve_f 3dDespike 3dDetrend 3dEmpty
3dEntropy 3dExtrema 3dFDR 3dFWHM
3dFWHMx 3dFourier 3dFriedman 3dGetrow
3dIntracranial 3dInvFMRI 3dKruskalWallis 3dLRflip
3dLocalBistat 3dLocalstat 3dMINCtoAFNI 3dMannWhitney
3dMean 3dMedianFilter 3dNLfim 3dNotes
3dOverlap 3dPAR2AFNI.pl 3dROIstats 3dRegAna
3dRowFillin 3dSkullStrip 3dStatClust 3dSurf2Vol
3dSurfMask 3dSurfMaskDump 3dSynthesize 3dTSgen
3dTagalign 3dTcat 3dTcorrelate 3dTfitter
3dThreetoRGB 3dToutcount 3dTqual 3dTshift
3dTsmooth 3dTsort 3dTstat 3dTwotoComplex
3dUndump 3dUniformize 3dUpsample 3dVol2Surf
3dWarp 3dWarpDrive 3dWavelets 3dWilcoxon
3dWinsor 3dZcat 3dZcutup 3dZeropad
3dZregrid 3danisosmooth 3daxialize 3dbuc2fim
3dbucket 3dcalc 3dclust 3dcopy
3ddelay 3ddot 3ddup 3dedge3
3dfim 3dfim+ 3dfractionize 3dhistog
3dinfo 3dmaskave 3dmaskdump 3dmatcalc
3dmaxima 3dmerge 3dnewid 3dnoise
3dnvals 3dpc 3dproject 3drefit
3drename 3dresample 3dretroicor 3drotate
3dsvm 3dttest 3dvolreg 4swap
@4Daverage @AddEdge @AfniOrient2RAImap @Align_Centers
@Center_Distance @CheckForAfniDset @CommandGlobb @DTI_studio_reposition
@DoPerRoi.py @FromRAI @GetAfniDims @GetAfniID
@GetAfniOrient @GetAfniPrefix @GetAfniRes @GetAfniView
@IsoMasks @NoExt @NoisySkullStrip @Purify_1D
@RenamePanga @SUMA_AlignToExperiment @SUMA_FSvolToBRIK @SUMA_Make_Spec_Caret
@SUMA_Make_Spec_FS @SUMA_Make_Spec_SF @ScaleVolume @SurfSmooth.HEAT_07.examples
@TTxform_anat @ToRAI @UpdateAfni @VolCenter
@align_partial_oblique @auto_align @auto_tlrc @clip_volume
@fix_FSsphere @float_fix @isOblique @make_stim_file
@np @parse_afni_name @parse_name @statauxcode
AFNI.afnirc AlphaSim AnalyzeTrace CompareSurfaces
ConvertDset ConvertSurface ConvexHull CreateIcosahedron
DTIStudioFibertoSegments Dimon DriveSuma FSread_annot
Ifile Imon IsoSurface MakeColorMap
MapIcosahedron ROI2dataset ROIgrow RSFgen
SampBias ScaleToMap Surf2VolCoord SurfClust
SurfDist SurfDsetInfo SurfInfo SurfMeasures
SurfMesh SurfPatch SurfQual SurfSmooth
SurfToSurf SurfaceMetrics Vecwarp Xphace
abut adwarp afni afni_history
afni_proc.py afni_vcheck aiv align_epi_anat.py
byteorder cat_matvec ccalc cdf
cjpeg count dicom_hdr dicom_to_raw
djpeg ent16 file_tool float_scan
from3d ftosh ge_header im2niml
imand imaver imcalc imcat
imcutup imdump immask imreg
imrotate imstack imstat imupsam
inspec lpc_align.py make_random_timing.py make_stim_times.py
mayo_analyze mpegtoppm mritopgm nifti1_test
nifti_stats nifti_tool nsize option_list.py
plugout_drive plugout_ijk plugout_tt quickspec
rmz rotcom rtfeedme serial_helper
siemens_vision sqwave strblast suma
suma_change_spec to3d waver whereami
whirlgif
README.Ifile README.atlas_building README.attributes README.bzip2
README.changes README.compression README.copyright README.driver
README.environment README.func_types README.notes README.permtest
README.plugouts README.realtime README.registration README.render_scripts
README.roi README.setup README.volreg README.web
README.ziad AFNI.changes.dglen AFNI.changes.rickr AFNI.afnirc
AFNI.Xdefaults
This page auto-generated on Fri May 9 00:58:19 EDT 2008 — RWCox

Created by Robert Cox
Last modified 2008-05-09 00:58
latest compile date
09 May 2008 00:05 EDT
latest afni version
AFNI_2008_02_01_1144
 
 
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